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RT @ZhijianLi3@twitter.com1/2 Delighted to share a python package pychromVAR that implemented the idea from the chromVAR paper published in...

https://genomic.social/@lucapine...

RT @ZhijianLi3@twitter.com

1/2 Delighted to share a python package pychromVAR that implemented the idea from the chromVAR paper published in by @AliciaSchep@twitter.com et al for inferring TF variability from scATAC-seq data.

πŸ¦πŸ”—: twitter.com/ZhijianLi3/status/

26.1.2023 21:25RT @ZhijianLi3@twitter.com1/2 Delighted to share a python package pychromVAR that implemented the idea from the chromVAR paper published in...
https://genomic.social/@lucapine...

RT @trevmanz@twitter.comI'm finally ready to introduce #anywidget - a new #Python library that makes creating and sharing custom...

https://genomic.social/@lucapine...

RT @trevmanz@twitter.com

I'm finally ready to introduce - a new library that makes creating and sharing custom @ProjectJupyter@twitter.com Widgets easy. No fiddling with messy build configs, packaging, or bundlers. Just start coding!

anywidget.dev/blog/introducing

πŸ¦πŸ”—: twitter.com/trevmanz/status/16

21.1.2023 15:37RT @trevmanz@twitter.comI'm finally ready to introduce #anywidget - a new #Python library that makes creating and sharing custom...
https://genomic.social/@lucapine...

RT @JoshTycko@twitter.comNew preprint! What is all that non-coding DNA doing? To understand if and how non-coding sequences regulate gene...

https://genomic.social/@lucapine...

RT @JoshTycko@twitter.com

New preprint! What is all that non-coding DNA doing?
To understand if and how non-coding sequences regulate gene expression, we need scalable and reliable perturbation methods

Delighted to present the @ENCODE_NIH@twitter.com Multi-center integrated analysis of non-coding CRISPR screens! twitter.com/biorxivpreprint/st

πŸ¦πŸ”—: twitter.com/JoshTycko/status/1

23.12.2022 04:07RT @JoshTycko@twitter.comNew preprint! What is all that non-coding DNA doing? To understand if and how non-coding sequences regulate gene...
https://genomic.social/@lucapine...

RT @anshulkundaje@twitter.comWe published a paper "Integrative single-cell analysis of cardiogenesis identifies developmental...

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RT @anshulkundaje@twitter.com

We published a paper

"Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease" 1/

authors.elsevier.com/c/1gIGbL7

DOI: doi.org/10.1016/j.cell.2022.11

πŸ¦πŸ”—: twitter.com/anshulkundaje/stat

22.12.2022 20:59RT @anshulkundaje@twitter.comWe published a paper "Integrative single-cell analysis of cardiogenesis identifies developmental...
https://genomic.social/@lucapine...

RT @CarldeBoerPhD@twitter.comNew preprint from our group where we test the "function" in "functional genomics" by seeing...

https://genomic.social/@lucapine...

RT @CarldeBoerPhD@twitter.com

New preprint from our group where we test the "function" in "functional genomics" by seeing what cells do with evolutionarily naΓ―ve DNA. Will they make transcripts? Open chromatin? Histone marks? Find out more at co-1st author @ishikaluthra@twitter.com's tweetorial! twitter.com/ishikaluthra/statu

πŸ¦πŸ”—: twitter.com/CarldeBoerPhD/stat

21.12.2022 01:38RT @CarldeBoerPhD@twitter.comNew preprint from our group where we test the "function" in "functional genomics" by seeing...
https://genomic.social/@lucapine...

Very hard to define "best" but this an interesting read including different perspectives and opinions from people I admire.RT...

https://genomic.social/@lucapine...

Very hard to define "best" but this an interesting read including different perspectives and opinions from people I admire.

RT @saezlab@twitter.com

Which single-cell analysis tool is best? w quotes from @hoheyn@twitter.com @morris_lab@twitter.com @jzlevin@twitter.com @markrobinsonca@twitter.com @lucapinello@twitter.com @DBBurkhardt@twitter.com our @JulioSaezRod@twitter.com about LIANA saezlab.github.io/liana/ + more nature.com/articles/d41586-022

πŸ¦πŸ”—: twitter.com/saezlab/status/160

20.12.2022 01:32Very hard to define "best" but this an interesting read including different perspectives and opinions from people I admire.RT...
https://genomic.social/@lucapine...

Wonderful to see this study finally published in @NatureGenet@twitter.com! Great collaboration with @danielevanbauer@twitter.com and...

https://genomic.social/@lucapine...

Wonderful to see this study finally published in @NatureGenet@twitter.com! Great collaboration with @danielevanbauer@twitter.com and @rosalbagiugno@twitter.com Read it for free here: rdcu.be/c1GYQ. Please provide feedback on our webapp CRISPRme for off-target enumeration: crisprme.di.univr.it/

16.12.2022 14:07Wonderful to see this study finally published in @NatureGenet@twitter.com! Great collaboration with @danielevanbauer@twitter.com and...
https://genomic.social/@lucapine...

RT @lucapinello@twitter.comOur new study with @danielevanbauer@twitter.com and Rosalba Giugno labs highlight the importance of including...

https://genomic.social/@lucapine...

RT @lucapinello@twitter.com

Our new study with @danielevanbauer@twitter.com and Rosalba Giugno labs highlight the importance of including genetic diversity when assessing off-target potential for ongoing clinical trials and future therapeutic CRISPR gene editing. biorxiv.org/cgi/content/short/

πŸ¦πŸ”—: twitter.com/lucapinello/status

16.12.2022 14:07RT @lucapinello@twitter.comOur new study with @danielevanbauer@twitter.com and Rosalba Giugno labs highlight the importance of including...
https://genomic.social/@lucapine...

RT @LangenauLab@twitter.comSeeking Post-Doctoral Fellows in Bioinformatics and Spatial Genomics at Mass General Pathology and Harvard Med...

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RT @LangenauLab@twitter.com

Seeking Post-Doctoral Fellows in Bioinformatics and Spatial Genomics at Mass General Pathology and Harvard Med School. The Immunopathology Research, Langenau and @lucapinello@twitter.com labs have multiple openings. Email CV to dlangenau@mgh.harvard.edu. Staff scientist jobs also available.

πŸ¦πŸ”—: twitter.com/LangenauLab/status

15.12.2022 21:01RT @LangenauLab@twitter.comSeeking Post-Doctoral Fellows in Bioinformatics and Spatial Genomics at Mass General Pathology and Harvard Med...
https://genomic.social/@lucapine...

RT @UrnovFyodor@twitter.com"Unless things change dramatically, the millions of people #CRISPR could save will never benefit from it. We...

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RT @UrnovFyodor@twitter.com

"Unless things change dramatically, the millions of people could save will never benefit from it. We must, and we can, build a world with for all."
@igisci@twitter.com @nytimes@twitter.com
nytimes.com/2022/12/09/opinion

πŸ¦πŸ”—: twitter.com/UrnovFyodor/status

10.12.2022 05:42RT @UrnovFyodor@twitter.com"Unless things change dramatically, the millions of people #CRISPR could save will never benefit from it. We...
https://genomic.social/@lucapine...

RT @matthen2@twitter.comwatch a 2 layer neural network learn to separate two classes to the left and rightπŸ¦πŸ”—:...

https://genomic.social/@lucapine...

RT @matthen2@twitter.com

watch a 2 layer neural network learn to separate two classes to the left and right

πŸ¦πŸ”—: twitter.com/matthen2/status/15

27.11.2022 14:22RT @matthen2@twitter.comwatch a 2 layer neural network learn to separate two classes to the left and rightπŸ¦πŸ”—:...
https://genomic.social/@lucapine...

RT @fabian_theis@twitter.com1/n Single-cell data analysis is complex with many tools to choose from - but which ones work best and should be...

https://genomic.social/@lucapine...

RT @fabian_theis@twitter.com

1/n Single-cell data analysis is complex with many tools to choose from - but which ones work best and should be used when? Led by @lukasheumos@twitter.com and @AnnaCSchaar@twitter.com, we wrote a free online book that aims to guide single-cell data analysts: sc-best-practices.org

πŸ¦πŸ”—: twitter.com/fabian_theis/statu

24.11.2022 17:55RT @fabian_theis@twitter.com1/n Single-cell data analysis is complex with many tools to choose from - but which ones work best and should be...
https://genomic.social/@lucapine...

RT @IGVFConsortium@twitter.comThe IGVF Consortium has posted two new workshops to our YouTube channel: MPRA design and Post-GWAS analyses....

https://genomic.social/@lucapine...

RT @IGVFConsortium@twitter.com

The IGVF Consortium has posted two new workshops to our YouTube channel: MPRA design and Post-GWAS analyses. Subscribe to learn more about the Impacts of Genomic Variation on Function: youtube.com/channel/UCn0l0X5a_

πŸ¦πŸ”—: twitter.com/IGVFConsortium/sta

22.11.2022 18:43RT @IGVFConsortium@twitter.comThe IGVF Consortium has posted two new workshops to our YouTube channel: MPRA design and Post-GWAS analyses....
https://genomic.social/@lucapine...

RT @TansuYegen@twitter.comThanks to Harvard University, you can now virtually enter the Great Pyramid of Giza in 3D and 360ΒΊπŸ¦πŸ”—:...

https://genomic.social/@lucapine...

RT @TansuYegen@twitter.com

Thanks to Harvard University, you can now virtually enter the Great Pyramid of Giza in 3D and 360ΒΊ

πŸ¦πŸ”—: twitter.com/TansuYegen/status/

12.11.2022 20:50RT @TansuYegen@twitter.comThanks to Harvard University, you can now virtually enter the Great Pyramid of Giza in 3D and 360ΒΊπŸ¦πŸ”—:...
https://genomic.social/@lucapine...

RT @cziscience@twitter.comGrantees @GioeleLaManno@twitter.com, @lucapinello@twitter.com + Eli Bingham are furthering #SingleCell RNA...

https://genomic.social/@lucapine...

RT @cziscience@twitter.com

Grantees @GioeleLaManno@twitter.com, @lucapinello@twitter.com + Eli Bingham are furthering RNA Velocity analysis by developing
πŸ“Œ Pyro-Velocity, a model that estimates the uncertainty of future cell states
πŸ“Œ Pyro-Speed, a method for supervised statistical testing

πŸ¦πŸ”—: twitter.com/cziscience/status/

9.11.2022 23:12RT @cziscience@twitter.comGrantees @GioeleLaManno@twitter.com, @lucapinello@twitter.com + Eli Bingham are furthering #SingleCell RNA...
https://genomic.social/@lucapine...

RT @davidrliu@twitter.comToday we share in @NatureRevGenet@twitter.com a review of prime editing for precise and versatile genome...

https://genomic.social/@lucapine...

RT @davidrliu@twitter.com

Today we share in @NatureRevGenet@twitter.com a review of prime editing for precise and versatile genome manipulation. The review covers current prime editing strategies, limitations, recent developments, and applications, including work from 148 publications. 1/5
drive.google.com/file/d/1K4emj

πŸ¦πŸ”—: twitter.com/davidrliu/status/1

8.11.2022 00:22RT @davidrliu@twitter.comToday we share in @NatureRevGenet@twitter.com a review of prime editing for precise and versatile genome...
https://genomic.social/@lucapine...

Hello genomic.social!

https://genomic.social/@lucapine...

Hello genomic.social!

5.11.2022 05:10Hello genomic.social!
https://genomic.social/@lucapine...
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