RT @ZhijianLi3@twitter.com
1/2 Delighted to share a python package pychromVAR that implemented the idea from the chromVAR paper published in by @AliciaSchep@twitter.com et al for inferring TF variability from scATAC-seq data.
π¦π: https://twitter.com/ZhijianLi3/status/1618458315952123904
26.1.2023 21:25RT @ZhijianLi3@twitter.com1/2 Delighted to share a python package pychromVAR that implemented the idea from the chromVAR paper published in...RT @trevmanz@twitter.com
I'm finally ready to introduce #anywidget - a new #Python library that makes creating and sharing custom @ProjectJupyter@twitter.com Widgets easy. No fiddling with messy build configs, packaging, or bundlers. Just start coding!
https://anywidget.dev/blog/introducing-anywidget
π¦π: https://twitter.com/trevmanz/status/1616328393825607681
21.1.2023 15:37RT @trevmanz@twitter.comI'm finally ready to introduce #anywidget - a new #Python library that makes creating and sharing custom...RT @JoshTycko@twitter.com
New preprint! What is all that non-coding DNA doing?
To understand if and how non-coding sequences regulate gene expression, we need scalable and reliable perturbation methods
Delighted to present the @ENCODE_NIH@twitter.com Multi-center integrated analysis of non-coding CRISPR screens! https://twitter.com/biorxivpreprint/status/1605995085228818454
π¦π: https://twitter.com/JoshTycko/status/1606035167352496128
23.12.2022 04:07RT @JoshTycko@twitter.comNew preprint! What is all that non-coding DNA doing? To understand if and how non-coding sequences regulate gene...RT @anshulkundaje@twitter.com
We published a paper
"Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease" 1/
https://authors.elsevier.com/c/1gIGbL7PXiquv
DOI: https://doi.org/10.1016/j.cell.2022.11.028
π¦π: https://twitter.com/anshulkundaje/status/1606009054727323648
22.12.2022 20:59RT @anshulkundaje@twitter.comWe published a paper "Integrative single-cell analysis of cardiogenesis identifies developmental...RT @CarldeBoerPhD@twitter.com
New preprint from our group where we test the "function" in "functional genomics" by seeing what cells do with evolutionarily naΓ―ve DNA. Will they make transcripts? Open chromatin? Histone marks? Find out more at co-1st author @ishikaluthra@twitter.com's tweetorial! https://twitter.com/ishikaluthra/status/1605257357994647553
π¦π: https://twitter.com/CarldeBoerPhD/status/1605262846006288385
21.12.2022 01:38RT @CarldeBoerPhD@twitter.comNew preprint from our group where we test the "function" in "functional genomics" by seeing...Very hard to define "best" but this an interesting read including different perspectives and opinions from people I admire.
RT @saezlab@twitter.com
Which single-cell analysis tool is best? w quotes from @hoheyn@twitter.com @morris_lab@twitter.com @jzlevin@twitter.com @markrobinsonca@twitter.com @lucapinello@twitter.com @DBBurkhardt@twitter.com our @JulioSaezRod@twitter.com about LIANA https://saezlab.github.io/liana/ + more https://www.nature.com/articles/d41586-022-04426-5
π¦π: https://twitter.com/saezlab/status/1604865631265792000
20.12.2022 01:32Very hard to define "best" but this an interesting read including different perspectives and opinions from people I admire.RT...Wonderful to see this study finally published in @NatureGenet@twitter.com! Great collaboration with @danielevanbauer@twitter.com and @rosalbagiugno@twitter.com Read it for free here: https://rdcu.be/c1GYQ. Please provide feedback on our webapp CRISPRme for off-target enumeration: http://crisprme.di.univr.it/
16.12.2022 14:07Wonderful to see this study finally published in @NatureGenet@twitter.com! Great collaboration with @danielevanbauer@twitter.com and...RT @lucapinello@twitter.com
Our new study with @danielevanbauer@twitter.com and Rosalba Giugno labs highlight the importance of including genetic diversity when assessing off-target potential for ongoing clinical trials and future therapeutic CRISPR gene editing. https://biorxiv.org/cgi/content/short/2021.05.20.445054v1
π¦π: https://twitter.com/lucapinello/status/1396104520967540738
16.12.2022 14:07RT @lucapinello@twitter.comOur new study with @danielevanbauer@twitter.com and Rosalba Giugno labs highlight the importance of including...RT @LangenauLab@twitter.com
Seeking Post-Doctoral Fellows in Bioinformatics and Spatial Genomics at Mass General Pathology and Harvard Med School. The Immunopathology Research, Langenau and @lucapinello@twitter.com labs have multiple openings. Email CV to dlangenau@mgh.harvard.edu. Staff scientist jobs also available.
π¦π: https://twitter.com/LangenauLab/status/1603423262473474048
15.12.2022 21:01RT @LangenauLab@twitter.comSeeking Post-Doctoral Fellows in Bioinformatics and Spatial Genomics at Mass General Pathology and Harvard Med...RT @UrnovFyodor@twitter.com
"Unless things change dramatically, the millions of people #CRISPR could save will never benefit from it. We must, and we can, build a world with #CRISPR for all."
#healthjustice @igisci@twitter.com @nytimes@twitter.com
https://www.nytimes.com/2022/12/09/opinion/crispr-gene-editing-cures.html
π¦π: https://twitter.com/UrnovFyodor/status/1601273509916704768
10.12.2022 05:42RT @UrnovFyodor@twitter.com"Unless things change dramatically, the millions of people #CRISPR could save will never benefit from it. We...RT @matthen2@twitter.com
watch a 2 layer neural network learn to separate two classes to the left and right
π¦π: https://twitter.com/matthen2/status/1596821727878991873
27.11.2022 14:22RT @matthen2@twitter.comwatch a 2 layer neural network learn to separate two classes to the left and rightπ¦π:...RT @fabian_theis@twitter.com
1/n Single-cell data analysis is complex with many tools to choose from - but which ones work best and should be used when? Led by @lukasheumos@twitter.com and @AnnaCSchaar@twitter.com, we wrote a free online book that aims to guide single-cell data analysts: https://sc-best-practices.org
π¦π: https://twitter.com/fabian_theis/status/1595810545365565447
24.11.2022 17:55RT @fabian_theis@twitter.com1/n Single-cell data analysis is complex with many tools to choose from - but which ones work best and should be...RT @IGVFConsortium@twitter.com
The IGVF Consortium has posted two new workshops to our YouTube channel: MPRA design and Post-GWAS analyses. Subscribe to learn more about the Impacts of Genomic Variation on Function: https://www.youtube.com/channel/UCn0l0X5a_Q4l0wGdMrPEy-A
π¦π: https://twitter.com/IGVFConsortium/status/1594741851990499329
22.11.2022 18:43RT @IGVFConsortium@twitter.comThe IGVF Consortium has posted two new workshops to our YouTube channel: MPRA design and Post-GWAS analyses....RT @TansuYegen@twitter.com
Thanks to Harvard University, you can now virtually enter the Great Pyramid of Giza in 3D and 360ΒΊ
π¦π: https://twitter.com/TansuYegen/status/1591191116019376139
12.11.2022 20:50RT @TansuYegen@twitter.comThanks to Harvard University, you can now virtually enter the Great Pyramid of Giza in 3D and 360ΒΊπ¦π:...RT @cziscience@twitter.com
Grantees @GioeleLaManno@twitter.com, @lucapinello@twitter.com + Eli Bingham are furthering #SingleCell RNA Velocity analysis by developing
π Pyro-Velocity, a model that estimates the uncertainty of future cell states
π Pyro-Speed, a method for supervised statistical testing
π¦π: https://twitter.com/cziscience/status/1590464413483532289
9.11.2022 23:12RT @cziscience@twitter.comGrantees @GioeleLaManno@twitter.com, @lucapinello@twitter.com + Eli Bingham are furthering #SingleCell RNA...RT @davidrliu@twitter.com
Today we share in @NatureRevGenet@twitter.com a review of prime editing for precise and versatile genome manipulation. The review covers current prime editing strategies, limitations, recent developments, and applications, including work from 148 publications. 1/5
https://drive.google.com/file/d/1K4emjRJIZSoB60Ah6Cw4nc_em76Y6K9Q/view
π¦π: https://twitter.com/davidrliu/status/1589671552395907072
8.11.2022 00:22RT @davidrliu@twitter.comToday we share in @NatureRevGenet@twitter.com a review of prime editing for precise and versatile genome...Hello genomic.social!
5.11.2022 05:10Hello genomic.social!