lucapinello - Network

RT @ZhijianLi3@twitter.com1/2 Delighted to share a python package pychromVAR that implemented the idea from the chromVAR paper published in...

RT @ZhijianLi3@twitter.com

1/2 Delighted to share a python package pychromVAR that implemented the idea from the chromVAR paper published in by @AliciaSchep@twitter.com et al for inferring TF variability from scATAC-seq data.

🐦🔗: https://twitter.com/ZhijianLi3/status/1618458315952123904

RT @trevmanz@twitter.comI'm finally ready to introduce #anywidget - a new #Python library that makes creating and sharing custom...

RT @trevmanz@twitter.com

I'm finally ready to introduce #anywidget - a new #Python library that makes creating and sharing custom @ProjectJupyter@twitter.com Widgets easy. No fiddling with messy build configs, packaging, or bundlers. Just start coding!

https://anywidget.dev/blog/introducing-anywidget

🐦🔗: https://twitter.com/trevmanz/status/1616328393825607681

RT @JoshTycko@twitter.comNew preprint! What is all that non-coding DNA doing? To understand if and how non-coding sequences regulate gene...

RT @JoshTycko@twitter.com

New preprint! What is all that non-coding DNA doing?
To understand if and how non-coding sequences regulate gene expression, we need scalable and reliable perturbation methods

Delighted to present the @ENCODE_NIH@twitter.com Multi-center integrated analysis of non-coding CRISPR screens! https://twitter.com/biorxivpreprint/status/1605995085228818454

🐦🔗: https://twitter.com/JoshTycko/status/1606035167352496128

RT @anshulkundaje@twitter.comWe published a paper "Integrative single-cell analysis of cardiogenesis identifies developmental...

RT @anshulkundaje@twitter.com

We published a paper

"Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease" 1/

https://authors.elsevier.com/c/1gIGbL7PXiquv

DOI: https://doi.org/10.1016/j.cell.2022.11.028

🐦🔗: https://twitter.com/anshulkundaje/status/1606009054727323648

RT @CarldeBoerPhD@twitter.comNew preprint from our group where we test the "function" in "functional genomics" by seeing...

RT @CarldeBoerPhD@twitter.com

New preprint from our group where we test the "function" in "functional genomics" by seeing what cells do with evolutionarily naïve DNA. Will they make transcripts? Open chromatin? Histone marks? Find out more at co-1st author @ishikaluthra@twitter.com's tweetorial! https://twitter.com/ishikaluthra/status/1605257357994647553

🐦🔗: https://twitter.com/CarldeBoerPhD/status/1605262846006288385

Very hard to define "best" but this an interesting read including different perspectives and opinions from people I admire.RT...

Very hard to define "best" but this an interesting read including different perspectives and opinions from people I admire.

RT @saezlab@twitter.com

Which single-cell analysis tool is best? w quotes from @hoheyn@twitter.com @morris_lab@twitter.com @jzlevin@twitter.com @markrobinsonca@twitter.com @lucapinello@twitter.com @DBBurkhardt@twitter.com our @JulioSaezRod@twitter.com about LIANA https://saezlab.github.io/liana/ + more https://www.nature.com/articles/d41586-022-04426-5

🐦🔗: https://twitter.com/saezlab/status/1604865631265792000

Wonderful to see this study finally published in @NatureGenet@twitter.com! Great collaboration with @danielevanbauer@twitter.com and...

Wonderful to see this study finally published in @NatureGenet@twitter.com! Great collaboration with @danielevanbauer@twitter.com and @rosalbagiugno@twitter.com Read it for free here: https://rdcu.be/c1GYQ. Please provide feedback on our webapp CRISPRme for off-target enumeration: http://crisprme.di.univr.it/

RT @lucapinello@twitter.comOur new study with @danielevanbauer@twitter.com and Rosalba Giugno labs highlight the importance of including...

RT @lucapinello@twitter.com

Our new study with @danielevanbauer@twitter.com and Rosalba Giugno labs highlight the importance of including genetic diversity when assessing off-target potential for ongoing clinical trials and future therapeutic CRISPR gene editing. https://biorxiv.org/cgi/content/short/2021.05.20.445054v1

🐦🔗: https://twitter.com/lucapinello/status/1396104520967540738

RT @LangenauLab@twitter.comSeeking Post-Doctoral Fellows in Bioinformatics and Spatial Genomics at Mass General Pathology and Harvard Med...

RT @LangenauLab@twitter.com

Seeking Post-Doctoral Fellows in Bioinformatics and Spatial Genomics at Mass General Pathology and Harvard Med School. The Immunopathology Research, Langenau and @lucapinello@twitter.com labs have multiple openings. Email CV to dlangenau@mgh.harvard.edu. Staff scientist jobs also available.

🐦🔗: https://twitter.com/LangenauLab/status/1603423262473474048

RT @UrnovFyodor@twitter.com"Unless things change dramatically, the millions of people #CRISPR could save will never benefit from it. We...

RT @UrnovFyodor@twitter.com

"Unless things change dramatically, the millions of people #CRISPR could save will never benefit from it. We must, and we can, build a world with #CRISPR for all."
#healthjustice @igisci@twitter.com @nytimes@twitter.com
https://www.nytimes.com/2022/12/09/opinion/crispr-gene-editing-cures.html

🐦🔗: https://twitter.com/UrnovFyodor/status/1601273509916704768

RT @matthen2@twitter.comwatch a 2 layer neural network learn to separate two classes to the left and right🐦🔗:...

RT @matthen2@twitter.com

watch a 2 layer neural network learn to separate two classes to the left and right

🐦🔗: https://twitter.com/matthen2/status/1596821727878991873

RT @fabian_theis@twitter.com1/n Single-cell data analysis is complex with many tools to choose from - but which ones work best and should be...

RT @fabian_theis@twitter.com

1/n Single-cell data analysis is complex with many tools to choose from - but which ones work best and should be used when? Led by @lukasheumos@twitter.com and @AnnaCSchaar@twitter.com, we wrote a free online book that aims to guide single-cell data analysts: https://sc-best-practices.org

🐦🔗: https://twitter.com/fabian_theis/status/1595810545365565447

RT @IGVFConsortium@twitter.comThe IGVF Consortium has posted two new workshops to our YouTube channel: MPRA design and Post-GWAS analyses....

RT @IGVFConsortium@twitter.com

The IGVF Consortium has posted two new workshops to our YouTube channel: MPRA design and Post-GWAS analyses. Subscribe to learn more about the Impacts of Genomic Variation on Function: https://www.youtube.com/channel/UCn0l0X5a_Q4l0wGdMrPEy-A

🐦🔗: https://twitter.com/IGVFConsortium/status/1594741851990499329

RT @TansuYegen@twitter.comThanks to Harvard University, you can now virtually enter the Great Pyramid of Giza in 3D and 360º🐦🔗:...

RT @TansuYegen@twitter.com

Thanks to Harvard University, you can now virtually enter the Great Pyramid of Giza in 3D and 360º

🐦🔗: https://twitter.com/TansuYegen/status/1591191116019376139

RT @cziscience@twitter.comGrantees @GioeleLaManno@twitter.com, @lucapinello@twitter.com + Eli Bingham are furthering #SingleCell RNA...

RT @cziscience@twitter.com

Grantees @GioeleLaManno@twitter.com, @lucapinello@twitter.com + Eli Bingham are furthering #SingleCell RNA Velocity analysis by developing
📌 Pyro-Velocity, a model that estimates the uncertainty of future cell states
📌 Pyro-Speed, a method for supervised statistical testing

🐦🔗: https://twitter.com/cziscience/status/1590464413483532289

RT @davidrliu@twitter.comToday we share in @NatureRevGenet@twitter.com a review of prime editing for precise and versatile genome...

RT @davidrliu@twitter.com

Today we share in @NatureRevGenet@twitter.com a review of prime editing for precise and versatile genome manipulation. The review covers current prime editing strategies, limitations, recent developments, and applications, including work from 148 publications. 1/5
https://drive.google.com/file/d/1K4emjRJIZSoB60Ah6Cw4nc_em76Y6K9Q/view

🐦🔗: https://twitter.com/davidrliu/status/1589671552395907072

Hello genomic.social!

Hello genomic.social!